The details of the method and related works can be found in these papers:

  • V. Phan, E.O. George, Q.T. Tran, S. Goodwin, S. Boddreddigari, T.R. Sutter, 2009. “Analyzing Microarray Data with Transitive Directed Acyclic Graphs”, Journal of Bioinformatics and Computational Biology, 7(1):135-156. (URL)
  • Q.T. Tran, X. Lijing, V. Phan, S. Goodwin, M. Rahman, V. Jin, C.H. Sutter, B. Roebuck, T. Kensler, E.O. George, T.R. Sutter, 2009. "Chemical genomics of cancer chemopreventive dithiolethiones", Carcinogenesis, 30(3):480-486. (URL)
  • Sutter TR, He XR, Dimitrov P, et al. "Multiple comparisons model-based clustering and ternary pattern tree numerical display of gene response to treatment: Procedure and application to the preclinical evaluation of chemopreventive agents", 2002. Mol Cancer Ther. 1(14):1283–1292. (URL)

Contacts

  • Vinhthuy Phan, vphan@memphis.edu
  • Thomas Sutter, tsutter@memphis.edu
  • Nam Sy Vo, nsvo1@memphis.edu