V. Phan, A. Thomas, K. Malasri, C.H. Sutter, “Stability of RNA Structural Motifs and Its Influence on Editing Efficiency by Adenosine Deaminases”, International Journal of Bioinformatics Research and Application, in press.
M. Garzon, T.Y. Wong, V. Phan, 2009. “DNA Chips for Species identification and Biological Phylogenies”, 15th International Meeting on DNA Computing, accepted.
Q.T. Tran, X. Lijing, V. Phan, S. Goodwin, M. Rahman, V. Jin, C.H. Sutter, B. Roebuck, T. Kensler, E.O. George, T.R. Sutter, 2009. "Chemical genomics of cancer chemopreventive dithiolethiones", Carcinogenesis, 30(3):480-486.
V. Phan, E.O. George, Q.T. Tran, S. Goodwin, S. Boddreddigari, T.R. Sutter, 2009. “Analyzing Microarray Data with Transitive Directed Acyclic Graphs”, Journal of Bioinformatics and Computational Biology, 7(1):135-156.
M. Garzon, V. Phan, A. Neel, 2009. “Optimal DNA Codes for Computing and Self-Assembly”, Int. Journal of Nanotechnology and Molecular Computation, 1(1):1-17.
V. Phan, N. Furlotte, 2008. “Motif Tool Manager: a web-based framework for motif discovery”, Bioinformatics 24(24):2930-2931.
V. Phan, M Garzon, 2008. "On Codeword Design in Metric DNA Spaces", Journal of Natural Computing, in press, doi 10.1007/s11047-008-9088-6.
V. Phan, K Malasri, 2008. "BioTDMS: a General-purpose System for Integrative Management of Bioinformatics Tools and Data", Int. Journal of Computational Biology and Drug Design, (1):2 174-184.
V. Phan, S. Saha, A. Pandey, T.Y. Wong, 2008. “Synthetic Gene Design with a Large Number of Hidden Stop Codons”, IEEE International Conference on Bioinformatics and Biomedicine (BIBM), p141-146.
V. Phan, E.O. George, Q.T. Tran, T. Sutter, 2008. “Toward a Combinatorial Approach to the Sample Size Problem in Multiple-treatment Microarray Studies”, 2008 Int. Conference on Bioinformatics & Computational Biology (BIOCOMP 2008), p175-181.
V. Phan, A. Thomas, 2007. “Stability of RNA Structural Motifs and Its Influence on Editing Efficiency by ADARS”, Int. Conference on Bioinformatics & Computational Biology (BIOCOMP 2007), p679-685. pdf
V. Phan, A. Thomas, 2007. “How to Build a System that Manages Bioinformatics Content”, Proceedings of the 2007 International Conference on Enterprise Information Systems and Web Technologies, p266-272. pdf
K. Bobba, A. Neal, M. Garzon, V. Phan, 2006. “Reason and Talking DNA: Can DNA understand English? Can we tell?”, 12th International Meeting on DNA Computing, Springer-Verlag Lecture Notes in Computer Science, 4287:337-349.
M. Garzon, V. Phan, S. Roy, A. Neal, 2006. “In Search of Optimal Codes for DNA Computing”, 12th International Meeting on DNA Computing, Springer-Verlag Lecture Notes in Computer Science, 4287:143-156.
M. Garzon, V. Phan, K. Bobba, R. Kontham, 2006. "Sensitivity and Capacity of Microarray Encodings", Eleventh International Meeting on DNA Computing, Lecture Notes in Computer Science, 3892:81-95, Springer-Verlag.
V. Phan, 2006. “A Method for Constructing Large DNA Codesets” in “Advanced Computational Methods for Biocomputing and Bioimaging”, edited by T. Pham, H. Yan and D. Crane, Nova Science Publishers, New York. pdf
V. Phan, M. Garzon, 2005. "Information Encoding using DNA", Tenth International Meeting on DNA Computing, Lecture Notes in Computer Science, 3384:281-292, Springer-Verlag. pdf
V. Phan, S. Skiena, 2005. “An Improved Time-sensitive Metaheuristic Framework for Combinatorial Optimization”, III Workshop on Efficient and Experimental Algorithms, Lecture Notes in Computer Science, 3059:432-445, Springer-Verlag. pdf
V. Phan, P. Sumazin, S. Skiena, 2003. “A Model for Analyzing Black-box Optimization”, Workshop on Algorithms and Data Structures, Lecture Notes in Computer Science, 2748:424-438, Springer-Verlag. pdf
V. Phan, M. Mukherjee, 2002. "Improved Line-End Fore-Shortening and Corner-Rounding Control in Optical Proximity Correction using Radius of Curvature Method", Proc. SPIE, Optical Microlithography XV 4691:1082-1090. pdf
V. Phan, P. Sumazin, S. Skiena, 2002. “A Time-sensitive System for Black-box Optimization”, Algorithm Engineering and Experiments, Lecture Notes in Computer Science, 2409:16-28, Springer-Verlag. pdf
V. Phan, S. Skiena, 2001. "Dealing with Errors in Interactive Sequencing by Hybridization", Bioinformatics, (17):10 862-70. pdf
V. Phan, S. Skiena, 2002. “Coloring Graphs with a General Heuristic Engine”, Computational Symposium on Graph Coloring and its Generalization, pages 92-99, Ithaca, New York.